| Colour Coding |
| Promoted to Conference National |
| Playoff for Conference National |
| Stay in Step Two |
| Relegated to Step Three |
| Football Conference South | ||||||||||
| Pos | Team | P | W | D | L | F | A | GD | Pts | PP |
| 1 | Grays Athletic | 42 | 30 | 8 | 4 | 118 | 31 | 87 | 98 | 98 |
| 2 | Cambridge City | 42 | 23 | 6 | 13 | 60 | 44 | 16 | 75 | 75 |
| 3 | Thurrock | 42 | 21 | 6 | 15 | 61 | 56 | 5 | 69 | 69 |
| 4 | Lewes | 42 | 18 | 11 | 13 | 73 | 64 | 9 | 65 | 65 |
| 5 | Eastbourne Borough | 42 | 18 | 10 | 14 | 65 | 47 | 18 | 64 | 64 |
| 6 | Basingstoke Town | 42 | 19 | 6 | 17 | 57 | 52 | 5 | 63 | 63 |
| 7 | Weymouth | 42 | 17 | 11 | 14 | 62 | 59 | 3 | 62 | 62 |
| 8 | Dorchester Town | 42 | 17 | 11 | 14 | 77 | 81 | -4 | 62 | 62 |
| 9 | Bognor Regis Town | 42 | 17 | 9 | 16 | 70 | 65 | 5 | 60 | 60 |
| 10 | Bishop's Stortford | 42 | 17 | 8 | 17 | 70 | 66 | 4 | 59 | 59 |
| 11 | Weston-super-Mare | 42 | 15 | 13 | 14 | 55 | 60 | -5 | 58 | 58 |
| 12 | Hayes | 42 | 15 | 11 | 16 | 55 | 57 | -2 | 56 | 56 |
| 13 | Havant & Waterlooville | 42 | 16 | 7 | 19 | 64 | 69 | -5 | 55 | 55 |
| 14 | St Albans City | 42 | 16 | 6 | 20 | 64 | 76 | -12 | 54 | 54 |
| 15 | Sutton United | 42 | 14 | 11 | 17 | 60 | 71 | -11 | 53 | 53 |
| 16 | Welling United | 42 | 15 | 7 | 20 | 64 | 68 | -4 | 52 | 52 |
| 17 | Hornchurch (-10) | 42 | 17 | 10 | 15 | 71 | 63 | 8 | 51 | 51 |
| 18 | Newport County | 42 | 13 | 11 | 18 | 56 | 61 | -5 | 50 | 50 |
| 19 | Carshalton Athletic | 42 | 13 | 9 | 20 | 44 | 72 | -28 | 48 | 48 |
| 20 | Maidenhead United | 42 | 12 | 10 | 20 | 54 | 81 | -27 | 46 | 46 |
| 21 | Margate (-10) | 42 | 12 | 8 | 22 | 54 | 75 | -21 | 34 | 34 |
| 22 | Redbridge (-3) | 42 | 11 | 3 | 28 | 50 | 86 | -36 | 33 | 33 |